Mastering Biology Chapter 18

25 July 2022
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question
In the shotgun approach to whole-genome sequencing (shotgun sequencing), random DNA fragments of a chromosome are sequenced. The fragment sequences are then assembled into a continuous sequence that represents the DNA of the entire chromosome. What are the steps in the shotgun approach to whole-genome sequencing? Drag the labels to their appropriate locations on the flowchart. Only some labels will be used.
answer
1. multiple copies of the same chromosome are prepared 2. chromosome copies are broken into 1-kb fragments 3. 1-kb fragments are cloned into plasmids 4. the plasmids are sequenced 5. a computer combines the fragment sequences
question
In the last step of shotgun sequencing, a computer analyzes a large number of fragment sequences to determine the DNA sequence of a whole chromosome. Given the following fragment sequences, what is the overall DNA sequence? Sequences of DNA fragments GATGAC CGATGCG GGCGTCAG GACATGGC TCAGTCGA Enter the complete DNA sequence, which should contain 24 bases.
answer
GATGACATGGCGTCAGTCGATGCG
question
The number of genes correlates with __________.
answer
the size of the genome in prokaryotes
question
What type of noncoding DNA composes the largest portion of multicellular eukaryotic genomes?
answer
transposons
question
How has gene duplication played a critical role in evolution?
answer
It produces redundant copies of existing genes, which are then free to mutate and adopt new functions.
question
Which of these characteristics affects the diffusion oxygen into the icefish's blood?
answer
Icefish have transparent, scale-less skin.
question
Icefish live in very cold waters (-1.8 degrees Celsius) where temperatures are below blood's freezing point. Which statements are true about icefish adaptations for cold water?
answer
Icefish have antifreeze proteins, which prevent blood from freezing. Icefish lack red blood cells, which reduces the viscosity (thickness) of blood, allowing it to flow more freely at cold temperatures.
question
Which statement is true of the Notothenioids?
answer
Notothenioids can live in very cold, nutrient-rich waters where other fish species cannot.
question
How did the icefish antifreeze gene arise?
answer
An existing gene was accidentally duplicated. It then acquired mutations, which caused it to have a different function.
question
Which of the following are true of the "death" of the icefish globin gene?
answer
Mutations destroyed the function of the icefish globin gene.
question
A strong selective pressure (like very cold water) can __________.
answer
cause a reproductive advantage for an individual with an advantageous mutation
question
Compare the "birth" and "death" of icefish genes.
answer
The "birth" of the antifreeze gene and the "death" of the globin gene are both caused by mutation.
question
If the template strand has two or more identical nucleotides in a row, their complementary nucleotides will be added one after the other in the same flow step. The labels on the vertical axis of the flow-gram indicate how many of the same nucleotide in a row are detected; for example, where a peak for C extends into the 3 region, it indicates 3 Cs in a row, or CCC. How are two or more of the same nucleotide (in a row) detected in the flow-gram?
answer
They show up as a higher peak in the flow-gram.
question
What are the first 11 nucleotides in the flow-gram shown, starting from the left? Enter your answer without spaces. (Ignore the very short lines.)
answer
TCAGCGTAAGG
question
Which of the following is likely to contain the most acrylamide?
answer
fried potato
question
You are a plant geneticist and wish to alter strawberries using the same technique as was used for the Innate Potato. Which of the following do you use?
answer
RNA interference
question
A genetically modified variety of tomato is created and approved for human consumption. Which of the following is most likely to not support this?
answer
Center for Food Safety
question
Why was Simplot interested in creating a potato that produced less acrylamide?
answer
Acrylamide is a suspected carcinogen.
question
You are interested in trying an Innate Potato. Where are you most likely to find one?
answer
Your local grocery store.
question
What is proteomics?
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the study of the full protein set encoded by a genome
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What is bioinformatics?
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the application of computational methods to the storage and analysis of biological data
question
What characteristic of short tandem repeat DNA makes it useful for DNA fingerprinting?
answer
The number of repeats varies widely from person to person or animal to animal.
question
The figure shows a diagram of blocks of genes on human chromosome 16 and the locations of blocks of similar genes on four chromosomes of the mouse. In opposite to human genes, similar genes in mouse chromosomes are located on different chromosomes and some of them changed their location. the figure shows a diagram of blocks of genes on human chromosome 16 and the locations of blocks of similar genes on four chromosomes of the mouse. What does the movement of these blocks in the genomes suggest?
answer
Chromosomal translocations have moved blocks of sequences to other chromosomes.
question
What is the goal of comparative genomic studies? to identify genes that are important for evolution of a particular species to identify homologues in model organisms for genes involved in human disease to study how genomes evolve to study genetic variation within a species or a population
answer
All of the listed responses are goals of comparative genomic studies.
question
Homeotic genes __________.
answer
encode transcription factors that control the expression of genes responsible for specific anatomical structures